PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279063.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family YABBY
Protein Properties Length: 182aa    MW: 20356 Da    PI: 8.408
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY230.34.9e-7121572170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     +++ +se+vCyv+CnfCntilavsvP tslf++vtvrCGhC++llsvn+ ++ q+++ ++      k+++  ++ ++++++      ++s+ ++ 
  XP_021279063.1   2 SLDLASERVCYVHCNFCNTILAVSVPCTSLFNIVTVRCGHCANLLSVNMGTSLQTVPIQDA----QKQQINTDQDHSNKEC-----GSSSKCNKF 87 
                     567799***************************************************9996....2222222222222222.....222222233 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     s+    ++ ++e+pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_021279063.1  88 SA---FDSAEHEAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157
                     33...4577899***999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MSLDLASERV CYVHCNFCNT ILAVSVPCTS LFNIVTVRCG HCANLLSVNM GTSLQTVPIQ  60
DAQKQQINTD QDHSNKECGS SSKCNKFSAF DSAEHEAPRM PPIRPPEKRQ RVPSAYNRFI  120
KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKQAKLDQA FAEGTQKSTG  180
YY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.17e-88YABBY family protein