PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279075.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WOX

Protein Properties

Length: 248aa MW: 28530.4 Da PI: 9.0958

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.9	4.7e-20	7	66	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee++++ r+p+a+++++++++l +++ ++V++WFqN++a++++ XP_021279075.1 7 SRWCPTPEQLMILEEMYRSgIRTPNASQIQKITSHLsfygKIEGKNVFYWFQNHKARDRQ 66 7***************99***********************************996 PP
2	Wus_type_Homeobox	120.5	7.2e-39	5	67	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 a++RW+PtpeQ++iLee+y+sG+rtPn+++iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk XP_021279075.1 5 ASSRWCPTPEQLMILEEMYRSGIRTPNASQIQKITSHLSFYGKIEGKNVFYWFQNHKARDRQK 67 689***********************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MSPAASSRWC PTPEQLMILE EMYRSGIRTP NASQIQKITS HLSFYGKIEG KNVFYWFQNH 60 KARDRQKLRR KLTKQLQLQQ QLYHQHHHHQ LQQNHPNHHF LHYFDSPGSP AFQHLSYFNS 120 ATLFPQVGVH EDAAAKQVMN YTWKFDIPER VDNMDKARMR MYGGDWLMMV DLDSPLSSPC 180 YSTATRPPLK TLELFPVTAS NLKEECNSSK HLSCISTTST TPNPTPDIPL NLPLTPSENK 240 PQALSLSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28610.1	7e-45	WOX family protein