PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279750.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 255aa    MW: 29569.5 Da    PI: 9.1816
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.4e-18130219198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h  +  ++ ++tl de+g+++  k+  +k++    l++GW++F  +++L +gD +vF+l+  +ef  +v 
  XP_021279750.1 130 FVKPMLQSHVTGGFWLGLPVQFCKKHLPD--QDEMITLVDEKGEEFPTKYLAEKTG----LSGGWRGFSLDHNLVDGDALVFQLVTPTEF--KVY 216
                     89************************533..5569***************555555....***********************9876666..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_021279750.1 217 IIR 219
                     887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MVAAKSTYEQ MRKRRLEENK KRMEELNLKN LSQALKNTSP KPSPVSMKQM KPRTPRQRVD  60
LTAVRRSSRV ADKPKPNYKD IPLEPLERPR RGHSRRNLWD RVYASDEERA YAIERAEHLQ  120
STLESDYPSF VKPMLQSHVT GGFWLGLPVQ FCKKHLPDQD EMITLVDEKG EEFPTKYLAE  180
KTGLSGGWRG FSLDHNLVDG DALVFQLVTP TEFKVYIIRA YESEDNEDGE PGEEDDKEPD  240
VQVLDRSAKR IRARK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-86B3 family protein