PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021279764.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 250aa    MW: 28995.8 Da    PI: 8.8606
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021279764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.2e-18125214198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f+++h  +  ++ ++tl de+g+++  k+  +k++    l++GW++F  +++L +gD +vF+l+  +ef  +v 
  XP_021279764.1 125 FVKPMLQSHVTGGFWLGLPVQFCKKHLPD--QDEMITLVDEKGEEFPTKYLAEKTG----LSGGWRGFSLDHNLVDGDALVFQLVTPTEF--KVY 211
                     89************************533..5569***************555555....***********************9876666..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_021279764.1 212 IIR 214
                     887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MVAAKSTYEQ MRKRRLEENK KRMEELNLKN LSQALKNTSP KPSPMKPRTP RQRVDLTAVR  60
RSSRVADKPK PNYKDIPLEP LERPRRGHSR RNLWDRVYAS DEERAYAIER AEHLQSTLES  120
DYPSFVKPML QSHVTGGFWL GLPVQFCKKH LPDQDEMITL VDEKGEEFPT KYLAEKTGLS  180
GGWRGFSLDH NLVDGDALVF QLVTPTEFKV YIIRAYESED NEDGEPGEED DKEPDVQVLD  240
RSAKRIRARK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-88B3 family protein