PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280133.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARF
Protein Properties Length: 605aa    MW: 67247.8 Da    PI: 7.4056
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.4e-2342142198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+++     +++ + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++
  XP_021280133.1  42 FCKILTASDTSTHGGFSVLRKHATDClppldMSQATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNG 134
                     99****************************9555566679************************************************..34899 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     el+v+v+r
  XP_021280133.1 135 ELRVGVRR 142
                     99****98 PP
2Auxin_resp104.31.5e-34168247183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha++t++ F v+Y+Pr+  s+F++ v+k+++a+k+ +svGmRfkm+fe+e+s+err++Gt+vgv d++p +W++SkWrsLk
  XP_021280133.1 168 AAHAVTTHTLFVVYYKPRT--SQFIIGVNKYLEAIKNGFSVGMRFKMRFEGEESPERRFTGTIVGVGDISP-HWSESKWRSLK 247
                     79****************6..9***********************************************99.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    
MAEQETDEVY AQITLQPEAD QSEPTSPDPC PTEAPKRTVH SFCKILTASD TSTHGGFSVL  60
RKHATDCLPP LDMSQATPTQ ELVAKDLHGY EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL  120
VAGDAFVFLR GDNGELRVGV RRLARQQSTM PSSVISSQSM HLGVLATAAH AVTTHTLFVV  180
YYKPRTSQFI IGVNKYLEAI KNGFSVGMRF KMRFEGEESP ERRFTGTIVG VGDISPHWSE  240
SKWRSLKIQW DEPATIQRPE RVSPWEIEPF VPSASINLVQ PAVKSKRPRP VDIPASEITT  300
NSAGSAFWCR GSTQSHELTQ VGSTVEVQSS ESQVMWPIRQ KEIDNCLANS SGGYNSRTRP  360
ENVWAPSPHV NVSLNLFRDS MDDNNKTGTP RTVLVGYASS VQSRPSNGLM LDQVEKGKKS  420
ETSTGCRLFG FNLTDSTSAA GPQDKEQTST TLNVDQNPET SKPSKEQKLV VSETSTKEMQ  480
GKQGAATSMR TRTKVHMQGI AVGRAVDLTV LKGYDDLINE LEKMFDIKGE LHPRGKWAVV  540
FTDDEGDMML VGDDPWMEFC KMVRKIFIYS SEEVKKMSAR CKFPASSLDG EGTVVSLDSE  600
HRSET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286290KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein