PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280198.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family YABBY
Protein Properties Length: 212aa    MW: 23341.7 Da    PI: 8.1604
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY243.15.5e-75111762170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesast 94 
                     d+ s s+q+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++      a + hl++sl  +  llee +++  n+  n+ +   + t
  XP_021280198.1  11 DHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHSLFTPqnLLEEIRSAPPNVLINQPN--PSDT 103
                     78899*****************************************9999988888888889998765534788888887777665543..3444 PP

           YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      +++    +   ee+p++p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  XP_021280198.1 104 VMPA---IRGGVEEIPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 176
                     4444...457889****999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MSSSSAAFSP DHLSPSDQLC YVHCNFCDTV LAVSVPCTSL FKTVTVRCGH CTNLLSVNMR  60
GLLLPAANQL HLGHSLFTPQ NLLEEIRSAP PNVLINQPNP SDTVMPAIRG GVEEIPKPPV  120
VNRPPEKRQR VPSAYNRFIK DEIQRIKAGN PDISHREAFS AAAKNWAHFP HIHFGLMPDQ  180
PVKKTNVRPQ EGEDVLMKDG FFASTNVGVT PF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-99YABBY family protein