PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280307.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 452aa MW: 50592.2 Da PI: 7.603

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_021280307.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.5	8.6e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_021280307.1 67 RGTFSQEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRXDLKRGTF SQEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPVTHKPLS EVENGEDKSQ QTNSRDKASR ASSELNLNTD NLKPGVTLHE QRLTSVTAHG 180 YQLEMEGSPX SKTMNGSNNN SNNKIXXHPQ PAKTFFPDRF AATHHESTTT NSQPSDLVGH 240 LPIQQLNYAS NARLSSTSNP TLWFTQNSKS FDINSEFSSS AMSTLLPPLT SSFLSAPMGF 300 KPSVSVSSDS PSMPSFTVNG SRYWETGASA NNSNSSSSTE LQSNSSFFEN SFSWGLADCS 360 TSEKEAPIPL MESQAEEIKW PEYLNNPLLV AAALQNQTPQ SLYNIEIKSE THFLTNSSNG 420 MWPHNQEQQE PLQNSDMCAK EIQRLTATYG HI

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRXDLKRGTF SQEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPVTHKPLS EVENGEDKSQ QTNSRDKASR ASSELNLNTD NLKPGVTLHE QRLTSVTAHG  180
YQLEMEGSPX SKTMNGSNNN SNNKIXXHPQ PAKTFFPDRF AATHHESTTT NSQPSDLVGH  240
LPIQQLNYAS NARLSSTSNP TLWFTQNSKS FDINSEFSSS AMSTLLPPLT SSFLSAPMGF  300
KPSVSVSSDS PSMPSFTVNG SRYWETGASA NNSNSSSSTE LQSNSSFFEN SFSWGLADCS  360
TSEKEAPIPL MESQAEEIKW PEYLNNPLLV AAALQNQTPQ SLYNIEIKSE THFLTNSSNG  420
MWPHNQEQQE PLQNSDMCAK EIQRLTATYG HI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	5e-93	MYB family protein