PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280319.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27254.4 Da    PI: 4.6632
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280319.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-183084256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++++f++eq++ Le  Fe+++ +  +++ + A++lgL+ rqV +WFqN+Ra++k
  XP_021280319.1 30 KNKRRFSDEQIKSLELIFESESRLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 84
                    67889*************************************************9 PP
2HD-ZIP_I/II119.81.5e-3831122293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krr+s+eq+k+LE  Fe+e++Lep++Kv++areLglqprqva+WFqn+RAR+k+kqlEkdy+ L+++y++l+++ e+L+ke+++L  +l++
  XP_021280319.1  31 NKRRFSDEQIKSLELIFESESRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKSKQLEKDYSILQASYNNLASKFESLKKEKQALVIQLQK 122
                     79************************************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MLDGEEYTQE MAEPFSSMNE VTTTKKKKNK NKRRFSDEQI KSLELIFESE SRLEPRKKVQ  60
VARELGLQPR QVAIWFQNKR ARWKSKQLEK DYSILQASYN NLASKFESLK KEKQALVIQL  120
QKLNDLLKKP IEEGQCCGQV TTTNSIDGDS EKGEAVKSDS EGQLSLSMER SEHALGVLSD  180
DDSAIKTDYF GLEEEPSLIN MVEPADGSLT SPEDWRSFDS VGLFDQSSSG YQWWDFWS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-79HD-ZIP family protein