PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280358.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 200aa    MW: 21805.8 Da    PI: 8.0576
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.51.5e-4091091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+ael
  XP_021280358.1   9 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHKVFGASNASKMLLRIPAHKRVDAVVTLCYEALARVRDPVYGCVGHIFTLQQQVVNLQAEL 103
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_021280358.1 104 AYIQAR 109
                     *99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MSANNGGGPC GACKFLRRKC VKGCIFAPYF DSDQGTAHFA AVHKVFGASN ASKMLLRIPA  60
HKRVDAVVTL CYEALARVRD PVYGCVGHIF TLQQQVVNLQ AELAYIQARL STLQLLPPSQ  120
AQCPSPTSLH SSSEVGSDLV SSSNMSMSID RPQPQQASIE LTSFPNPFDQ ELENEELQAL  180
AREFVSRYLP GVRFRPSTSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-66LBD family protein