PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021280430.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 294aa MW: 32708.7 Da PI: 8.9635

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021280430.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	8e-18	130	184	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_021280430.1 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 788899***********************************************98 PP
2	HD-ZIP_I/II	125.4	2.5e-40	130	219	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l XP_021280430.1 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 219 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MGGEKDDGLG LSLGLGCAQN HPSWKLNRMP LASPRMQNLQ RKNTWNELFQ SSDRNLDTRS 60 FLRGIDVNRA PATVDCEEEG GVSSPNSTIS SISGKRNERD LVGDETEAER ASCSRASDDE 120 DGGAGGDASR KKLRLSKEQS LLLEETFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEYLKRCCE NLTEENRRLQ KEVQELRALK LSPQLYMHMN PPTTLTMCPS 240 CERVAVSSSS SAAAAASSTP TSTVPNRHHR TSPVSPWAAM PISHRPFHAP ASRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	135	SRKKLRL
2	179	187	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-88	HD-ZIP family protein