PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280531.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24956.8 Da    PI: 9.885
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.5e-311059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien ++rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_021280531.1 10 RIENATRRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
                    8***********************************************86 PP
2K-box80.73.5e-2777169698
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++ +e++++ l++e+a++ k+ie L+ + R+llGe+L+s+sl+eL qLeqqLe+s+++iR++K ++++eq+e+l++kek l  en +L +k 
  XP_021280531.1  77 RTKPSEQNMQLLKTEAANMVKKIELLEVSRRKLLGEGLGSCSLEELLQLEQQLERSVSSIRARKAQVFKEQMEQLKEKEKVLAAENARLCEKC 169
                     3447999*********************************************************************************99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MVRGKTQMRR IENATRRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFAST  60
SMQETIERYN RHTKDTRTKP SEQNMQLLKT EAANMVKKIE LLEVSRRKLL GEGLGSCSLE  120
ELLQLEQQLE RSVSSIRARK AQVFKEQMEQ LKEKEKVLAA ENARLCEKCA MRPWQGSKEQ  180
RENVPYDESS PSIDVETELF IGLPERRTKC FLLQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-66MIKC_MADS family protein