PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280611.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 168aa    MW: 18846.8 Da    PI: 5.0122
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.52.2e-3814111198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C  +C+lapyfp ++ +kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG++g i++lq+ +++l  +l+
  XP_021280611.1  14 PCAACKMLRRRCDGKCILAPYFPCDEIEKFAGVHKVFGASNVIKMIQMVEETNREDAAKALVYEATARIRDPVYGSTGAIFQLQKMVQELTMQLE 108
                     7********************************************************************************************99 PP

          DUF260  96 llk 98 
                     ++k
  XP_021280611.1 109 STK 111
                     887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MGLEALARAR THQPCAACKM LRRRCDGKCI LAPYFPCDEI EKFAGVHKVF GASNVIKMIQ  60
MVEETNREDA AKALVYEATA RIRDPVYGST GAIFQLQKMV QELTMQLEST KALVLELQQQ  120
KDQLLGILLN VNHIDLLSPI DGGSFSLDYD DSMAYDPAKF PVECDWIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-43LBD family protein