PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021280771.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 208aa    MW: 22740.9 Da    PI: 7.9917
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021280771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.94.8e-40171181101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l
  XP_021280771.1  17 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQL 111
                     7*************************99******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_021280771.1 112 MQVKAQL 118
                     *999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MASSGSATAT ATATGSPCGA CKFLRRKCAS DCIFAPYFCS EQGPARFAAI HKVFGASNVS  60
KLLLHIPAHD RCEAVVTIAY EAQARIRDPV YGCVAHIFAL QQQVACLQAQ LMQVKAQLAQ  120
NAMNSHNIES QWQGNLSGLP SIPTYPSYMN PISPQSSLES VEPNSADSMN MQEIQSREEF  180
SFQGYPKKRL YNSDLGELQA LALRMMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-67LBD family protein