PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281143.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 549aa MW: 61854.5 Da PI: 8.7519

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281143.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.6e-18	57	103	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l av+++ g++Wk+Ia++++ Rt+ qc +rwqk+l XP_021281143.1 57 KGGWTQEEDKMLTTAVQKFNGKNWKKIAECVP-DRTDVQCLHRWQKVL 103 688***************************.**********986 PP
2	Myb_DNA-binding	59.4	8e-19	109	155	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel+ ++v++ G++ W+ Ia++++ gR +kqc++rw+++l XP_021281143.1 109 KGPWSKEEDELIFELVEKQGKKKWSEIAKYLP-GRIGKQCRERWFNHL 155 79****************************.***********97 PP
3	Myb_DNA-binding	52.7	9.9e-17	162	203	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE++ l++a+ +G++ W+ Ia+ ++ gRt++++k++w+ XP_021281143.1 162 TAWTEEEELVLIRAHGTYGNR-WAEIAKLLP-GRTENSIKNHWN 203 68*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MEEVKEDGDN TTTAIDDVND NINYESENLF VDHQICPDVS LYCLFRRISG PTRRSTKGGW 60 TQEEDKMLTT AVQKFNGKNW KKIAECVPDR TDVQCLHRWQ KVLNPDLVKG PWSKEEDELI 120 FELVEKQGKK KWSEIAKYLP GRIGKQCRER WFNHLNPDIK KTAWTEEEEL VLIRAHGTYG 180 NRWAEIAKLL PGRTENSIKN HWNCSVKKKV ELLAASGINR GNHDRKVECM SFGLGKPLEQ 240 NVNQGRSTNP YSPQLVLGDT DGKESNLAIS NRGTCRVVRK DANGTMKPSS LTMFAKRYDD 300 GSDLAIKQHQ MHACDAQAPG HNYNLAANWS DRFRHASFGD LVKFPFLHER TTEHGFPPSP 360 LPLSTPLDAT IAADCDRKAA VPGFVERLYT SVRPQDRNTE NVELRLGCLS YESLQIKDLN 420 TFLTTGRLFP QTDSDVRMVS SPVFFNTPPV SRSCPETILR RAAKSFKNTP SIIRKRSSQS 480 TRQTSNHNES DGVGSNAKQL FLSPPKSPKL ETTAVTKSVE KRLEYVQDSS SSIPRASSTA 540 DHPSSTNST

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MEEVKEDGDN TTTAIDDVND NINYESENLF VDHQICPDVS LYCLFRRISG PTRRSTKGGW  60
TQEEDKMLTT AVQKFNGKNW KKIAECVPDR TDVQCLHRWQ KVLNPDLVKG PWSKEEDELI  120
FELVEKQGKK KWSEIAKYLP GRIGKQCRER WFNHLNPDIK KTAWTEEEEL VLIRAHGTYG  180
NRWAEIAKLL PGRTENSIKN HWNCSVKKKV ELLAASGINR GNHDRKVECM SFGLGKPLEQ  240
NVNQGRSTNP YSPQLVLGDT DGKESNLAIS NRGTCRVVRK DANGTMKPSS LTMFAKRYDD  300
GSDLAIKQHQ MHACDAQAPG HNYNLAANWS DRFRHASFGD LVKFPFLHER TTEHGFPPSP  360
LPLSTPLDAT IAADCDRKAA VPGFVERLYT SVRPQDRNTE NVELRLGCLS YESLQIKDLN  420
TFLTTGRLFP QTDSDVRMVS SPVFFNTPPV SRSCPETILR RAAKSFKNTP SIIRKRSSQS  480
TRQTSNHNES DGVGSNAKQL FLSPPKSPKL ETTAVTKSVE KRLEYVQDSS SSIPRASSTA  540
DHPSSTNST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	6e-87	MYB family protein