PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281158.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 297aa MW: 33634.1 Da PI: 5.0925

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.7e-19	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l+ +v+ +G g+W+++ar g++Rt+k+c++rw++yl XP_021281158.1 23 KGPWTEEEDSMLKAYVNIHGEGRWNSVARLSGLKRTGKSCRLRWLNYL 70 79********************************************97 PP
2	Myb_DNA-binding	50.2	5.7e-16	76	119	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_021281158.1 76 RGNISLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 78899***************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MDVYERGLIS ETPQSEEEMD VRKGPWTEEE DSMLKAYVNI HGEGRWNSVA RLSGLKRTGK 60 SCRLRWLNYL RPEVRRGNIS LEEQLLILEL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTR 120 VQKQAKQLKC DVNSKQFRDA MRYVWIPRLI ERIRATSESP SGQPSSSSTT TYMNSGSNIT 180 TSQITYANTT GSVQVDPSLL PELSGTSSDS LDTQVSSVSD LTDCYNPQSA SNNPNNLQNG 240 SGLCAENLAG AWRRDGGIDF QATEEQSNGW LGGGDSLESV WNEENIWFLQ QQLHDEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	8e-83	MYB family protein