PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281278.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 238aa    MW: 24864.2 Da    PI: 7.7559
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.76.2e-41261261100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_021281278.1  26 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAEL 120
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_021281278.1 121 SYLQAH 126
                     *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MSANPSSSGG SVGSGAGSCS SAGGGPCGAC KFLRRKCVPG CIFAPYFDSE QGAAHFAAVH  60
KVFGASNVSK LLLHIPVHKR LDAVVTICYE AQARLRDPVY GCVAHIFALQ QQVVNLQAEL  120
SYLQAHLATL ELPSPPPPPP PSTTLMAPPP LSISDLPSVS TVPATYDLSS LFDPVVQHSW  180
GMQQRQIDPR QFGGSGSSSL TGSGDLHALA RELLHRQGSP QHGCLPCTDA SPSQSLSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.17e-79LBD family protein