PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281503.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 255aa MW: 28951.2 Da PI: 8.3608

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281503.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88	5.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e++s XP_021281503.1 9 KRIENANSRQVTFSKRRAGLLKKAKELAILCDAEVAVIIFSNTGKLFEFAS 59 79***********************************************86 PP
2	K-box	73	8.8e-25	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e++ +++ ++e+++Lk+ei +Lq +q +llG+dL+sLslkeLq LeqqL+++l ++++kK++ll+eq+e+++ +e+++ en++Lr++++e XP_021281503.1 82 VEHKAEKQDSKEADNLKDEIAKLQMKQLQLLGKDLTSLSLKELQLLEQQLNEGLLSVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVQE 173 5667788999*******************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAKELAILCD AEVAVIIFSN TGKLFEFASS 60 GMKKTLSRYD KCSQGTPEIA LVEHKAEKQD SKEADNLKDE IAKLQMKQLQ LLGKDLTSLS 120 LKELQLLEQQ LNEGLLSVKE KKEQLLMEQL EQSRVQEQRA MLENETLRRQ VQELRGFFPS 180 TARPVQSYLE CYAVERKNPL MNHSIPSPDV TCNCTVEKGD SDTTLYLGLP SDCHKRKKPE 240 RETHSNDSES QLGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-69	MIKC_MADS family protein