PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281961.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27385.9 Da    PI: 10.537
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF374.5e-121857342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i  +s r+ tf kR++g+ KK +EL +L ++e +vii+s+
  XP_021281961.1 18 ITKDSARKATFRKRKKGLSKKTSELNTLYGIETSVIIYSP 57
                    778999*********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MESLHAATTR KKLKLSYITK DSARKATFRK RKKGLSKKTS ELNTLYGIET SVIIYSPYDA  60
QPKVWPSPAG AQHVLSKFKK MHKMDQSMGM MSQESFIKQR IKLANKRLKR QCKDNRKKET  120
TQVIFQCLVR QGLENLNMMD LNDLGWLLKQ NMKFIDRRIY MLTKASHSQG SVATASATMA  180
TPEAMLKTGE KVHVESLEHE VSPKTEQRQQ LIKDLMHSPE DIGLDSVLSF GDNNPIAFLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11032RKKLKLSYITKDSARKATFRKRK
22933RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-40M-type_MADS family protein