PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282125.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LBD

Protein Properties

Length: 241aa MW: 26347.6 Da PI: 6.9268

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.8e-39	42	143	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_021282125.1 42 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILSLQQQVASLQAEL 136 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 a+++++l XP_021282125.1 137 AMVQNQL 143 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MAEPQCHGMS ETRRKGTSKR ATMPVEADEP VVAAPAPVPA APCGACKFLR RKCISGCIFA 60 PHFGSDQGAA RFAAVHKVFG ASNVSKLLLH IPVNRRHDAV VTISYEAQAR LSDPVYGCVS 120 TILSLQQQVA SLQAELAMVQ NQLINSRFAM ANALQSSQQQ QQQQQQQQQQ QHIGLLQPAY 180 SNNSSASNSL INMSNFTSSF DLVAETAPSS QSMDRLDQLS RPCHDDEDDE EESRIPAIFR 240 H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	6e-61	LBD family protein