PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282454.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 245aa MW: 27862.5 Da PI: 10.0022

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G g+W++ ++ g+ R++k+c++rw +yl XP_021282454.1 14 KGPWTPEEDRILISYIQRYGHGNWRALPKQAGLPRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	52.5	1.1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE+e + ++++ lG++ W++Ia++++ gRt++++k++w+ + XP_021282454.1 67 RGNFTSEEQETIFKLHQVLGNR-WSAIAARLP-GRTDNEIKNYWHGH 111 89******************.*****.*********966 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MARAPCCEKM GMKKGPWTPE EDRILISYIQ RYGHGNWRAL PKQAGLPRCG KSCRLRWINY 60 LRPDIKRGNF TSEEQETIFK LHQVLGNRWS AIAARLPGRT DNEIKNYWHG HLKKKLKQTA 120 AGSTDRKAIK EARIALHHQR DQSPGLMKPS ISSQHSPEPT SSTSTTKLET EELALTREQQ 180 GAVEESAGVQ FPHSHLSTVE TMKNNGPNAD GNRDFWYNLF MENSNEAHGK NRISLGSFAN 240 YPCFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	6e-72	MYB family protein