PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282472.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 231aa MW: 26099.5 Da PI: 5.4069

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.3e-17	5	53	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT+eEd ll+++++q+G g W +++ g ++R++k+c++rw++yl XP_021282472.1 5 AWTEEEDHLLKKCIEQYGEGKWQRVPLLAGnigLNRCRKSCRLRWLNYL 53 7**********************************************97 PP
2	Myb_DNA-binding	47.4	4.3e-15	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +eE l+++++k+lG++ W++Ia +++ gRt++++k++w+ + XP_021282472.1 59 RGSFAKEEVHLIIKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 103 78999***************.*****.*********977 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MGGVAWTEEE DHLLKKCIEQ YGEGKWQRVP LLAGNIGLNR CRKSCRLRWL NYLRPNIKRG 60 SFAKEEVHLI IKLHKLLGNR WSLIAGRLPG RTANDVKNYW NCHLSKKLNI AQETEEKENA 120 INVEIGPQPR GNATTGSVKP RSPDIVPNSQ PTIEESSMST PFHFVEVSQQ GQGLVKEDDS 180 SLGVEEPGIL GDMRTDIGQF YELNILSSDE GCGKWDWDDL VLDMDLWTDS V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	4e-55	MYB family protein