PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282473.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 228aa MW: 25815.2 Da PI: 5.4069

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	5	50	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++q+G g W +++ g++R++k+c++rw++yl XP_021282473.1 5 AWTEEEDHLLKKCIEQYGEGKWQRVPLLAGLNRCRKSCRLRWLNYL 50 7*******************************************97 PP
2	Myb_DNA-binding	47.5	4.2e-15	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +eE l+++++k+lG++ W++Ia +++ gRt++++k++w+ + XP_021282473.1 56 RGSFAKEEVHLIIKLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100 78999***************.*****.*********977 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MGGVAWTEEE DHLLKKCIEQ YGEGKWQRVP LLAGLNRCRK SCRLRWLNYL RPNIKRGSFA 60 KEEVHLIIKL HKLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLNIAQE TEEKENAINV 120 EIGPQPRGNA TTGSVKPRSP DIVPNSQPTI EESSMSTPFH FVEVSQQGQG LVKEDDSSLG 180 VEEPGILGDM RTDIGQFYEL NILSSDEGCG KWDWDDLVLD MDLWTDSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	5e-57	MYB family protein