PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282529.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 29021.4 Da PI: 6.5311

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282529.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.7	1.3e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRrng+lKKA ELS+LCdaev vi+fsstgk+y +ss XP_021282529.1 9 KKIENLNSRQVTFSKRRNGLLKKARELSILCDAEVGVIVFSSTGKVYQWSS 59 68***********************************************96 PP
2	K-box	56	1.8e-19	83	173	11	100
K-box 11 eakaeslq.qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++lq +++ Lk+e+ L+ + +l G++L+ L++keLqqLe+qL++++ +++++K+++l eq+++++ +e+++ en++Lrk++ee XP_021282529.1 83 SDEHKNLQpIDVNTLKEEYLRLRASYMRLSGKELDGLTFKELQQLEHQLNEGILSVKEQKEQILQEQLKRSRLQERQATLENETLRKQIEE 173 4455555525899***************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KARELSILCD AEVGVIVFSS TGKVYQWSST 60 SMEHILLRYS RGTTEDRSRE HPSDEHKNLQ PIDVNTLKEE YLRLRASYMR LSGKELDGLT 120 FKELQQLEHQ LNEGILSVKE QKEQILQEQL KRSRLQERQA TLENETLRKQ IEELRQNTSS 180 NLLEYNPLQR VPPNSSKAEY DCASEEEDDH TDNNDHSDTS LQLGLPSDVG RKRKVAKIEP 240 VSNETTSQVA SE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	2e-59	MIKC_MADS family protein