PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021283045.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 139aa    MW: 15324 Da    PI: 7.4579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021283045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.37.1e-106587527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                     C++f++tG+C++Gd+Ck+ H++
  XP_021283045.1 65 VCNRFLKTGFCQFGDNCKYFHPM 87
                    5*******************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
TEEDKENALG KYYCDYCEKQ FQDTPSARKR HLQGLQHLRA KAQWYHSQNA NDPNHSLTEP  60
FAKGVCNRFL KTGFCQFGDN CKYFHPMNDS RGANPQAAAA PGPGGVEGAG IGMSWGNLPP  120
SLKPPPEGGY PPLPFVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.19e-32C3H family protein