PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021283082.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 239aa    MW: 27031.1 Da    PI: 10.0562
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021283082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-171150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ tf kR++g+lKK +ELS+LC++e++ ii+s+
  XP_021283082.1 11 ITNDSARKATFKKRKKGLLKKVNELSTLCGIEACAIIYSP 50
                    89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MTRKKVKLAY ITNDSARKAT FKKRKKGLLK KVNELSTLCG IEACAIIYSP YDAQPEVWPS  60
PAGAQRVLSE FKKMPEMEQS KKMVSQESFL RQRITKANEQ LKRQCRDNRE KEITQVMFQC  120
LVGKGLQNLN MMDLNDLGWL LEQNLKDIDK RIDTLNKASH SRGSAAASSG TTMATLDARL  180
KSGEKVQPES SDREVSMETA QRQQWIKDLM HPPEHVGLGS VLPFGDNNPT ALWSNAFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-55M-type_MADS family protein