PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283173.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 309aa MW: 34817.9 Da PI: 8.236

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	5.7e-18	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl XP_021283173.1 25 RGPWTPEEDELLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72 89****************************99**********97 PP
2	Myb_DNA-binding	48.4	2.2e-15	78	123	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_021283173.1 78 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123 678889**************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MRSPSLSGAS TTSKTPCCSK VGIKRGPWTP EEDELLANYI KREGEGRWRT LPKRAGLLRC 60 GKSCRLRWMN YLRPSVKRGR IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120 THLSKKLISQ GIDPRTHKPL NLVSHSSSQV NHDPVPKPNP IPPNFNSSQL GENTIAMTAK 180 TTTQDFTPTN LEYHQQYDQN QQVVASMANW RNPDGATLIV GQPSSLGNGG DYIENCNEDV 240 FSSFLDSLIN DNLFVNQQQE QQQPNNVVAA EASTQNFTHG NIWEAEIMSS MVAFGNEQNP 300 FINHHQHQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-81	MYB family protein