PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021283222.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26751.8 Da    PI: 9.7759
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021283222.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.5e-191152344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i  +s r+ tf kR++g+lKKA+ELS+LC+++++vii+s+ +
  XP_021283222.1 11 ITKDSARKATFRKRKKGLLKKASELSTLCGIDASVIIYSPYN 52
                    778999*********************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MTRSKVKISY ITKDSARKAT FRKRKKGLLK KASELSTLCG IDASVIIYSP YNTQPDVWPS  60
PTEAQRVLSK FKKMPKMDQS VEMMSQESLL KQRIELANKQ LKRQCRDNRE KEITQVMFQC  120
LGGQGLENLN MMDLNDLGWL LEQNMKDIDR RIYMLTKASH SQGSVAAASA SATMATPEAM  180
LKSGEKVHVE SPEREVSPET EQRQQLIKDL MHSPENMRLD SVFSFGDNNP NAFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-46M-type_MADS family protein