PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021283223.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 229aa    MW: 26381.7 Da    PI: 9.8344
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021283223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.6e-181150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+  f kR +g+lKKA+ELS+LC++e++vii+++
  XP_021283223.1 11 IINDSARKAAFRKRTKGLLKKASELSTLCGIEACVIIYGP 50
                    7799**********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MTRKKVQLAY IINDSARKAA FRKRTKGLLK KASELSTLCG IEACVIIYGP YDAQPEVWPS  60
FAAAQHVLSE FKKMPKMDQS QKMMTQENFL RQRIAKANQQ LKRQCRDNRE KETTQVMFQC  120
LAEQGLENLN MMDLTDLKWL LEQNLKDIDK RIDMLTKASH SQGFATTIAM PEVMLKNGEK  180
VQAKSPDREA SLETVQRQLL IKDLMHPREH VELGSLLPLR DNNPTTFFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-61M-type_MADS family protein