PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283332.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 226aa MW: 26001.4 Da PI: 9.4874

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.5e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++v ++G g+W++++ g+ R +k+c++rw +yl XP_021283332.1 15 KGLWSPEEDLKLRNYVLKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	56.7	5.5e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl XP_021283332.1 68 RGMFTPQEEETILTLHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 113 789*****************.*****.**********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MGYKPSDKPK AKHRKGLWSP EEDLKLRNYV LKHGHGCWSS VPINAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FTPQEEETIL TLHHMLGNKW SQIAQHLPGR TDNEIKNYWH SYLKKKVAKV 120 EESEAKTRTH YTTSSSENTE SILSPQTVIG QMPSYDSLQH FEKPSIDIDQ SFPQHFDFPK 180 EPQRSSLPKL LFAEWLSLDQ EGGSFANSVK PVTSSDGFNQ VIFMMD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	5e-60	MYB family protein