PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021283353.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26207.1 Da    PI: 9.3986
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021283353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.51.7e-181450642
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +s r+ tf kR++g+lKKA+ELS+LC++e++vii+s+
  XP_021283353.1 14 DSARKATFGKRKKGLLKKASELSTLCGIEASVIIYSP 50
                    6889********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MTSSKVKISY ITIDSARKAT FGKRKKGLLK KASELSTLCG IEASVIIYSP YDAQPEVWPS  60
PARAQQVLSD FKKMPKKDQS MGMMSQKSFL RQRIELANKR LKKQCRDNRE KEITQVMFQC  120
LAGQGLENLN MMDLNDLGWL LEQNLKDIDR RISMFPQASQ SQGYATAASA TMATPEAMLN  180
SGEKVEVKSP ERGVSPETEQ RQQLIKDLMH SPEDMGLDSM LSFGDNNPNA FFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-44M-type_MADS family protein