PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283583.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 455aa MW: 49451.2 Da PI: 8.5088

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.5	1.6e-11	65	91	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_021283583.1 65 PGEPDCSYYIRTGLCRFGATCRFNHPP 91 5789*********************97 PP
2	zf-CCCH	38.8	1.6e-12	112	136	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_021283583.1 112 QPECQYYLKTGTCKFGATCKFHHPR 136 799********************96 PP
3	zf-CCCH	36.5	8.1e-12	158	182	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_021283583.1 158 ETECAYYLRTGQCKFGSTCKFHHPQ 182 578********************97 PP
4	zf-CCCH	36.1	1.1e-11	316	342	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G C+F+H++ XP_021283583.1 316 PGQPECQFYMKTGDCKFGTVCRFHHPR 342 5789*********************96 PP
5	zf-CCCH	40.7	4e-13	362	388	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ XP_021283583.1 362 PGEPLCIFYSRYGICKFGPSCKFNHPM 388 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MTAEWNSXFD AGIPMSRTAA AVAAAAAVAV TEGTSLSPSL NQDALWQMNL RSSETMESGP 60 YPERPGEPDC SYYIRTGLCR FGATCRFNHP PNRKLAIAAA RMKGEFPERA GQPECQYYLK 120 TGTCKFGATC KFHHPRDKAG IAGRVSLNIL GYPLRPNETE CAYYLRTGQC KFGSTCKFHH 180 PQPTNMMVSV RGSPIYQTVP SPTTPGQQSY AGGITNWSRA SFIPSPRWQG PSSYAPLILP 240 QGVVSVPGWN AYSGQLASVS SSENLQQTNG NNQYGTSHQN ESATAGSQAS FSQFRSGSVP 300 VGYYALQREN VFPERPGQPE CQFYMKTGDC KFGTVCRFHH PRERVLPAPD CLLSPIGLPL 360 RPGEPLCIFY SRYGICKFGP SCKFNHPMGI FTYNYSTSSP SDAPVHRLLG SSSGTAGLNL 420 SSEGLVEAGS TKARRLSLSE NRQLSSSDDN IDTEG

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MTAEWNSXFD AGIPMSRTAA AVAAAAAVAV TEGTSLSPSL NQDALWQMNL RSSETMESGP  60
YPERPGEPDC SYYIRTGLCR FGATCRFNHP PNRKLAIAAA RMKGEFPERA GQPECQYYLK  120
TGTCKFGATC KFHHPRDKAG IAGRVSLNIL GYPLRPNETE CAYYLRTGQC KFGSTCKFHH  180
PQPTNMMVSV RGSPIYQTVP SPTTPGQQSY AGGITNWSRA SFIPSPRWQG PSSYAPLILP  240
QGVVSVPGWN AYSGQLASVS SSENLQQTNG NNQYGTSHQN ESATAGSQAS FSQFRSGSVP  300
VGYYALQREN VFPERPGQPE CQFYMKTGDC KFGTVCRFHH PRERVLPAPD CLLSPIGLPL  360
RPGEPLCIFY SRYGICKFGP SCKFNHPMGI FTYNYSTSSP SDAPVHRLLG SSSGTAGLNL  420
SSEGLVEAGS TKARRLSLSE NRQLSSSDDN IDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein