PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021283648.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26097.8 Da    PI: 9.5983
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021283648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.4e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ien +nrqvt+skRrng++KKA+EL vLCda+v++i+fs tgkl+e++s
  XP_021283648.1  9 KLIENATNRQVTYSKRRNGLFKKANELTVLCDARVSIIMFSRTGKLHEFIS 59
                    569**********************************************86 PP
2K-box98.31.1e-3271169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk  g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L++ s+++Lq Leq++e+s+k iR++K++++ +qi++++kk ++++e++++L 
  XP_021283648.1  71 YQKVLGVDLWTTQYEKMQEQLKKLKEVNRNLRKEIRQRMGDCLNDVSFEDLQALEQEMETSVKLIRDRKYRVISNQIDTSRKKVRNVEEIHRNLL 165
                     78888999**************************************************************************************9 PP

           K-box  96 kkle 99 
                     ++l+
  XP_021283648.1 166 HELD 169
                     9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MARGKIQIKL IENATNRQVT YSKRRNGLFK KANELTVLCD ARVSIIMFSR TGKLHEFISP  60
STSTKQIYDQ YQKVLGVDLW TTQYEKMQEQ LKKLKEVNRN LRKEIRQRMG DCLNDVSFED  120
LQALEQEMET SVKLIRDRKY RVISNQIDTS RKKVRNVEEI HRNLLHELDA IKEDPYGLVD  180
NGGDYDTIIG YQNGGPRIFA LRLQPNHPNL HSGGGSDLTT YPLLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-96MIKC_MADS family protein