PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283674.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TCP

Protein Properties

Length: 460aa MW: 49429 Da PI: 7.9576

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.7	1.5e-36	160	266	2	90
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesss 79 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt ++ssa++++++ XP_021283674.1 160 TAKRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTgtvpaiavsvggtlkipTTSSANASNNN--- 251 789*************************************************************5555555555554444333333222111... PP TCP 80 ssasnsssg......ka 90 +s++n+ + k+ XP_021283674.1 252 NSNNNN--QiddgaiKK 266 111111..122322221 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MVLFCPFALF LITLLLLLIF VEIFPFVHFH VYRFIILRVL TSSPFPDRNE SQENFPLVPW 60 QKSNTTQFRD MDPDDDGGTS DLSTSAGEPN TSTAATANNK NNDKNCENSA HPLMPLKEEP 120 IDSDPDHKTH PSPPIGVVPV AMQIQQMPMQ IPAMPMPVST AKRSSTKDRH TKVEGRGRRI 180 RIPATCAARI FQLTRELGHK SDGETVRWLL EHAEQAIIEA TGTGTVPAIA VSVGGTLKIP 240 TTSSANASNN NNSNNNNQID DGAIKKRKRP ANSEFCDISD GIPFAVSQSQ QQLVTQASGL 300 APVTPQGVVP VWAVGNTGMM VPANAFWMIP QPAATAAGNG LTNQQPSPQM WTLSPSLTPV 360 FNVAARPISS FVATTNQVQA VVCNGLSTLA LNTSSTPVGA TVAKKSTMAP SVSSGGNGSG 420 STGGKPQLLR DFSLEIYDKQ ELQFMGRSGN HHQQMQASKP

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MVLFCPFALF LITLLLLLIF VEIFPFVHFH VYRFIILRVL TSSPFPDRNE SQENFPLVPW  60
QKSNTTQFRD MDPDDDGGTS DLSTSAGEPN TSTAATANNK NNDKNCENSA HPLMPLKEEP  120
IDSDPDHKTH PSPPIGVVPV AMQIQQMPMQ IPAMPMPVST AKRSSTKDRH TKVEGRGRRI  180
RIPATCAARI FQLTRELGHK SDGETVRWLL EHAEQAIIEA TGTGTVPAIA VSVGGTLKIP  240
TTSSANASNN NNSNNNNQID DGAIKKRKRP ANSEFCDISD GIPFAVSQSQ QQLVTQASGL  300
APVTPQGVVP VWAVGNTGMM VPANAFWMIP QPAATAAGNG LTNQQPSPQM WTLSPSLTPV  360
FNVAARPISS FVATTNQVQA VVCNGLSTLA LNTSSTPVGA TVAKKSTMAP SVSSGGNGSG  420
STGGKPQLLR DFSLEIYDKQ ELQFMGRSGN HHQQMQASKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-64	TCP family protein