PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021283811.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 266aa MW: 29855.7 Da PI: 7.451

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021283811.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4.2e-19	122	176	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_021283811.1 122 RKKLRLSKEQSAILEDSFKEHSTLNPKQKQLLAEQLNLRPRQVEVWFQNRRARTK 176 788899***********************************************98 PP
2	HD-ZIP_I/II	123.4	1.1e-39	122	210	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+++LE+sF+e+++L+p++K+ la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +eL+ + XP_021283811.1 122 RKKLRLSKEQSAILEDSFKEHSTLNPKQKQLLAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLQKELQELK-S 210 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MGFDDVCNTG LGLGLGCLVK QEQFSQSDHQ QKKKKLFLKH DHFFPSLTLG PSDDIYQSAT 60 KIDASKAHGE SIDLHQQTSS LSAVSSFSNS SVKRERDFGG EEVELERVSS RVSDEDEEGS 120 PRKKLRLSKE QSAILEDSFK EHSTLNPKQK QLLAEQLNLR PRQVEVWFQN RRARTKLKQT 180 EVDCELLKKC CETLTEENKR LQKELQELKS LKLTASYCMQ LPAATLTMCP SCERVASGGE 240 GPSTSPFTIG QKSHFFNPFT HPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	179	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-63	HD-ZIP family protein