PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021283836.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 228aa    MW: 26163.2 Da    PI: 10.4908
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021283836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.3e-16129218198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k +++s+v+   +l lp +f++++  +k ++  +tl de+g++    +  rk++    l++GWk+F+ a++L +gD +vF+l++ ++f  +v 
  XP_021283836.1 129 FTKSMLQSHVTGGFWLGLPVHFCKRNL-PK-RDEVMTLIDEEGQEHPAIYLARKTG----LSGGWKGFAVAHELVDGDALVFQLVRPTTF--KVY 215
                     899********************9994.33.5568***************656665....************************986777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_021283836.1 216 ILR 218
                     776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MVEARQELSY EECRRKRVEE NKKRMEALNL PQLSQALRTP SFKPSPRKQV QPRTVEKQLV  60
VVRRSSRVAN KPASVYHEVL VEKVSIPRRR VSKQRDLSNR VYASDEARAE ALEKAEKLES  120
GLEPDFPTFT KSMLQSHVTG GFWLGLPVHF CKRNLPKRDE VMTLIDEEGQ EHPAIYLARK  180
TGLSGGWKGF AVAHELVDGD ALVFQLVRPT TFKVYILRVK GSEQRNKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-75B3 family protein