PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284325.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24437.9 Da    PI: 8.7846
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.9e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+s+gk++ey+s
  XP_021284325.1  9 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDARVSLIIFASSGKMHEYCS 59
                    79***********************************************96 PP
2K-box87.62.4e-2971167197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k+sgk+l++ak+e+l++e++++kke++++  e+Rhl+Ged++sL++keL+ +e++Le++l  +R+k++++l e  +++++ e+++++ n   +
  XP_021284325.1  71 YHKTSGKRLWDAKHENLSNEIDRIKKENDSMHIELRHLKGEDITSLQYKELMAIEDALENGLACVRAKQMDVLDETRKNTKMLEEDNKQLNFIVN 165
                     7999***************************************************************************************9888 PP

           K-box  96 kk 97 
                     ++
  XP_021284325.1 166 QQ 167
                     77 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITVLCD ARVSLIIFAS SGKMHEYCSP  60
STNLIDILDQ YHKTSGKRLW DAKHENLSNE IDRIKKENDS MHIELRHLKG EDITSLQYKE  120
LMAIEDALEN GLACVRAKQM DVLDETRKNT KMLEEDNKQL NFIVNQQHIA YENAREQMDN  180
GYQRARDFSS QMPFAFRVQP MQPNLQERM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-92MIKC_MADS family protein