PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284389.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 25405.9 Da PI: 7.3886

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.7	3.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+ey+s XP_021284389.1 10 KIDNVTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEYAS 59 69**********************************************86 PP
2	K-box	46.9	1.1e-16	89	170	17	98
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ +L ke +++R++ GedL+ Ls+ eLqqLe+ Le++l+++ ++K e + ++i+ l kk +l eenk+L++k+ XP_021284389.1 89 ENSNHIRLSKEFAVKSHQLRQMRGEDLQGLSIDELQQLEKMLESGLTRVLETKGERISSEISALEKKGAQLLEENKQLKQKM 170 5556667788888778999*************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MAREKIKIRK IDNVTARQVT FSKRRRGLFK KAEELSVLCD AEVALIIFSA TGKLFEYASS 60 SMRDILGRYN VHSNNLNKLD QPSLELQLEN SNHIRLSKEF AVKSHQLRQM RGEDLQGLSI 120 DELQQLEKML ESGLTRVLET KGERISSEIS ALEKKGAQLL EENKQLKQKM VTLCNGKRPI 180 LAESDAAVQE EGVSSESVTN VYSCNSGPTL EDDSSDTSLK LGLPFSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-103	MIKC_MADS family protein