PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284652.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 171aa    MW: 19215.8 Da    PI: 6.78
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.96.2e-37291245100
          DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                      ++lrr+C++dC+++pyfp+++p++f  +h+++Gasnv kll++lp++ r +a++sl++eA++r++dPvyG+vg+i+ lqqql++++++la++++
  XP_021284652.1  29 IRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAEAADSLYFEAQCRVEDPVYGCVGLIFLLQQQLHNAESQLAKTQA 123
                     689*****************************************************************************************998 PP

          DUF260 100 e 100
                     e
  XP_021284652.1 124 E 124
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MKVRIHEAGE GAVHSLYSVL LVSQALISIR YLRRRCPPDC IFSPYFPSNN PQRFVSIHRI  60
YGASNVAKLL QQLPTHLRAE AADSLYFEAQ CRVEDPVYGC VGLIFLLQQQ LHNAESQLAK  120
TQAEIAVLKS QAQHPQTQQV EAEPEFNNFL QQQLDNAADL NFSNQGSSGF M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.18e-52LBD family protein