PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284659.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 336aa MW: 37489.2 Da PI: 6.6234

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284659.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.4	4.6e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+++kq+G g+W++ ++ g++R++k+c++rw +yl XP_021284659.1 14 KGPWTPEEDQKLVQYIKQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.4	5.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++ +++++ lG++ W++Ia +++ gRt++++k++w+++l XP_021284659.1 67 RGKFSQDEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGRSPCCDEN GLKKGPWTPE EDQKLVQYIK QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQDEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 IDPMTHQPRT DIFASLPQLI ALANLRDLVE STNPLDDHTV RLQAEAVQLA RLQYLQFLVQ 180 SAASMTNNSY SQNGIADMEA FNLLNSSVPD IKENQVLNPA PISLGNTTSQ PLHHPALLSH 240 LPDPQVPFSF QTSLNCEKTA LNSEMGHCSS FTIVSQGDNQ TDNSSWLLPS PTLPPTVTET 300 SISNPGDVSS TSSYNGAASP YWHELYFEDS IMHEIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-125	MYB family protein