PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284755.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 249aa MW: 27873.2 Da PI: 9.229

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284755.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G ++W++I+r++ gR++k+c++rw + XP_021284755.1 35 KGPWSAEEDRILTRLVERYGARNWSLISRYIK-GRSGKSCRLRWCNQ 80 79***************************9.*********985 PP
2	Myb_DNA-binding	55	1.8e-17	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ XP_021284755.1 89 PFSPAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 131 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MEAMNRCSSS TSSSDTSSSE SSLSARASNK AEKIKGPWSA EEDRILTRLV ERYGARNWSL 60 ISRYIKGRSG KSCRLRWCNQ LSPSVEHRPF SPAEDETILA AHARYGNRWA TIARLLPGRT 120 DNAVKNHWNS TLKRRARGGQ QQQQQEQQQQ MLLHQQEQVV QSHQQMEGGD NALGSVGMMM 180 DEEALTALTL APPGSGVPSG SAVVLAERRS RDERVPAEFW DVMRDVIARE VREYMTTTIS 240 AETPGFPLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	3e-59	MYB family protein