PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284812.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LBD
Protein Properties Length: 224aa    MW: 24231.5 Da    PI: 8.3994
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.45.4e-292104198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ Cvl+  +     p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+q+
  XP_021284812.1   2 SCNGCRVLRKGCSETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPETQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHLCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelallk 98 
                     +a+++l++
  XP_021284812.1  97 AADTVLQG 104
                     **998775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSCNGCRVLR KGCSETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPETQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHLCQAAADT VLQGGALRPI PGILAGVWTP  120
SCDESSVRFC ANSGDFQSRY AQSKPLMTMM MMENKSASAA SDLSLSLSTK LGGGRRGSGR  180
RYEVERKRAR AAAASLYSEE SEITTFESNE NEGSQERKIL NLFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-63LBD family protein