PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284845.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WOX

Protein Properties

Length: 228aa MW: 26012.9 Da PI: 4.7979

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.3e-20	88	148	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ XP_021284845.1 88 RQRWTPTSLQLQILESIYDLgNGTPSKQKIKEITAELeqhgQISETNVYNWFQNRRARSKR 148 89***************88************************************97 PP
2	Wus_type_Homeobox	101.4	6.4e-33	87	150	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe++y+ G tP+k++i++itaeLe++G+i+++NV++WFQNr+aR+++kq XP_021284845.1 87 ARQRWTPTSLQLQILESIYDLGNGTPSKQKIKEITAELEQHGQISETNVYNWFQNRRARSKRKQ 150 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MEWQNQEVQQ REEGYLQYQF QNGVCGKVMT DEQMEELRKQ IVAYAVISEQ LAEMHKAMSA 60 HQDFTGIRLG NPYCDPIVAS IGHKITARQR WTPTSLQLQI LESIYDLGNG TPSKQKIKEI 120 TAELEQHGQI SETNVYNWFQ NRRARSKRKQ QASGSINAEP EEDAEGLGTK EKRTKPESLE 180 FIDIPAQGVE SFYFQNPDTG IDQFTGKVES SRGYDPYNNL VEQFGLLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-62	WOX family protein