PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284877.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LBD

Protein Properties

Length: 145aa MW: 15981.4 Da PI: 9.6405

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123	1.6e-38	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv++pyfp+++ ++fa +hk++Gasnv kll++lp ++r +a++sl++eA++r++ PvyG+vg+++++qqq++ ++++la XP_021284877.1 5 RCAACKYLRRKCPSDCVFSPYFPSNNLQRFASIHKIYGASNVAKLLQQLPVHHRAQAVDSLFFEAHCRIEAPVYGCVGLVFTVQQQIHDAATQLA 99 6********************************************************************************************** PP DUF260 96 llkee 100 +++++ XP_021284877.1 100 KTRAK 104 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence
MNPGRCAACK YLRRKCPSDC VFSPYFPSNN LQRFASIHKI YGASNVAKLL QQLPVHHRAQ 60 AVDSLFFEAH CRIEAPVYGC VGLVFTVQQQ IHDAATQLAK TRAKVAVLKS TAHHSQIQSD 120 SNVFLPGPQS VAHLGLFNQA SFGFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-52	LBD family protein