PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285081.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 232aa MW: 26068.8 Da PI: 6.2323

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.5e-07	125	198	10	88
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 vGF++ ++ k + ei++ ++ k+gk++ +++ + r+ + gCk k +v++ek d +++t+ e +HnHe XP_021285081.1 125 VGFKIAFRT----KSDLEIMDDGYKWRKYGKKRVKNSP--NPRNYYRCSAAGCKVKKRVEREKeDPLFVITTYEGKHNHE 198 677776654....457799**********9998877..889999999*********98999**********7 PP
2	WRKY	99	3e-31	140	198	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K vk+s++pr+YYrC+ agC+vkk+ver++edp +v++tYeg+Hnhe XP_021285081.1 140 MDDGYKWRKYGKKRVKNSPNPRNYYRCSAAGCKVKKRVEREKEDPLFVITTYEGKHNHE 198 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MSNSNITTFL EAAAAAAVNI PQQSSSPIYS HAVMDDNSAD QLDFDEDFLI LAAVAGEGTN 60 FETNASSSSC LKASTTLSQS PFLSSYEMTR SSVKGCWEVP RTSSVDDMQQ DGEGYVKTME 120 MDDHVGFKIA FRTKSDLEIM DDGYKWRKYG KKRVKNSPNP RNYYRCSAAG CKVKKRVERE 180 KEDPLFVITT YEGKHNHESP SADTDICHNA INPDQRTSHQ LQFLHHHQQR QP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	3e-30	WRKY family protein