PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285101.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 261aa MW: 29091.1 Da PI: 6.8623

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285101.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	54	101	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f L llP++ K +K++i+ +Av YIk+Lq XP_021285101.1 54 MHIWTERERRKKMKNMFCSLHALLPQL----PAKADKSTIVDEAVTYIKNLQ 101 56678*******************6....39****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MKPYNSSSNS PDIDMEMGTV AIAQGVQKRS RKGGFTNGKA KVCGDAGDQS VHEMHIWTER 60 ERRKKMKNMF CSLHALLPQL PAKADKSTIV DEAVTYIKNL QQTLQKLQQQ KLEKLRSATV 120 VDYDQSSIIT SQVQVPESRE AFLADQGPSN NYPMTTDVSQ TFPACFQTWF SPNVVINMCG 180 DDAQISVCSP RKPGVFTTIL YILEKHQLEV VSAHISSDQY RSMYMIHVHA GGASDQFSEA 240 VSVEETFKLA AGEMNLWLLS C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	67	KRSRKGGFTNGKAKVCGDAGDQSVHEMHIWTERERRKKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-38	bHLH family protein