PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285782.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 243aa MW: 27674.6 Da PI: 9.0787

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s XP_021285782.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	102.1	7.2e-34	80	173	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +s ++ +++s++qe+ kLk+++e Lqr+qR+llGedL++L+ keL++Le+qLe+slk+iRs+K++ +l+q+ +lq++e++l e+nk+Lr+klee XP_021285782.1 80 TSRSAIETQSSYQEYLKLKARVEVLQRSQRNLLGEDLGPLNTKELEELENQLETSLKQIRSTKTQAMLDQLGDLQNREQMLVETNKSLRRKLEE 173 44677899***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS 60 SSMMKTLEKY QKCSYSTVDT SRSAIETQSS YQEYLKLKAR VEVLQRSQRN LLGEDLGPLN 120 TKELEELENQ LETSLKQIRS TKTQAMLDQL GDLQNREQML VETNKSLRRK LEELSAQPPL 180 RLAWEAGGPN IPYNRLPPHS EGFFQLLGGN SSLQIGYNPV VSDEMNVAGQ NQNVCGYFPG 240 WML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-108	MIKC_MADS family protein