PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285849.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 371aa MW: 41669.8 Da PI: 7.1036

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l +++++G g+W++ +++ g+ R++k+c++rw +yl XP_021285849.1 14 RGPWTPEEDQKLMAYIQKHGHGSWRSLPEKAGLQRCGKSCRLRWINYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.5	1.2e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++ XP_021285849.1 67 RGKFSLDEEKTIIQLHALLGNR-WSAIASHLP-KRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGRSPCYDAT GLKRGPWTPE EDQKLMAYIQ KHGHGSWRSL PEKAGLQRCG KSCRLRWINY 60 LRPDIKRGKF SLDEEKTIIQ LHALLGNRWS AIASHLPKRT DNEIKNYWNT HIKKRLAMMG 120 IDPATHKPVV AALGSGNGEP KKVTNLTHMA QWESARLEAE ARLVRESSKL RQNYQQPTAG 180 LPCPPPTQRV NKIASRLGSP RCLDILKAWQ RVQLKSLVIE NNGGDHGGNL QSPTSTSNLQ 240 NIPVSSTNCN IATFHSIDVN EGFTTFQDME FEAGQAWSMG ACDAEDDDMI KGFSNFLSNN 300 WETDHLVQYP NTDKDGNSGS SDGVSENDDE NKNYLDDVFN LVDCGLRYSD STLLHNNICM 360 EHLELFIRPT C

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGRSPCYDAT GLKRGPWTPE EDQKLMAYIQ KHGHGSWRSL PEKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLDEEKTIIQ LHALLGNRWS AIASHLPKRT DNEIKNYWNT HIKKRLAMMG  120
IDPATHKPVV AALGSGNGEP KKVTNLTHMA QWESARLEAE ARLVRESSKL RQNYQQPTAG  180
LPCPPPTQRV NKIASRLGSP RCLDILKAWQ RVQLKSLVIE NNGGDHGGNL QSPTSTSNLQ  240
NIPVSSTNCN IATFHSIDVN EGFTTFQDME FEAGQAWSMG ACDAEDDDMI KGFSNFLSNN  300
WETDHLVQYP NTDKDGNSGS SDGVSENDDE NKNYLDDVFN LVDCGLRYSD STLLHNNICM  360
EHLELFIRPT C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-100	MYB family protein