PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286215.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 371aa MW: 42607.6 Da PI: 6.3814

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_021286215.1 79 CSyeGCGKTFIDAGALRKHSHIH 101 77779**************7766 PP
2	zf-C2H2	17.3	1.3e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H XP_021286215.1 106 YVCHweGCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	20.7	1.1e-06	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nL++H++tH XP_021286215.1 136 FICPheGCGKAFSLDFNLRSHMKTH 160 78**********************9 PP
4	zf-C2H2	17.8	9.3e-06	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi +H XP_021286215.1 166 HICPypDCGKRYAHEYKLKNHIASH 190 679999*****************96 PP
5	zf-C2H2	15.2	6e-05	229	254	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + Lk H+r+ H XP_021286215.1 229 YVCPyeGCEKAYIHEYKLKLHLRReH 254 99**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MEMQFPHNLF ERRPILKSRA PAVKWFKEWV PQDVVATGGK CMILKWVNEN TLKALKEKEK 60 EPEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHW EGCGKKFLDS 120 SKLKRHFLIH TGERDFICPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRYAHE 180 YKLKNHIASH HEKSTTADVP KYATPTEKIT KTPKPSGGAY GSASSDRPYV CPYEGCEKAY 240 IHEYKLKLHL RREHPGHMSD ENVENATPNA DNEMDEASDQ DAYAGKRVNG KSQKQQSRAK 300 PNVKMPPAKI ARKKGSSPVT LPVPKKQWPV KEEVYEEEDS EETEEDRENV EDGWTYADNN 360 EDDDEETEYE D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MEMQFPHNLF ERRPILKSRA PAVKWFKEWV PQDVVATGGK CMILKWVNEN TLKALKEKEK  60
EPEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHW EGCGKKFLDS  120
SKLKRHFLIH TGERDFICPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PDCGKRYAHE  180
YKLKNHIASH HEKSTTADVP KYATPTEKIT KTPKPSGGAY GSASSDRPYV CPYEGCEKAY  240
IHEYKLKLHL RREHPGHMSD ENVENATPNA DNEMDEASDQ DAYAGKRVNG KSQKQQSRAK  300
PNVKMPPAKI ARKKGSSPVT LPVPKKQWPV KEEVYEEEDS EETEEDRENV EDGWTYADNN  360
EDDDEETEYE D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-144	C2H2 family protein