PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021286312.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 227aa MW: 24758 Da PI: 9.0306

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021286312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.9	1.2e-25	135	179	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk +e+ XP_021286312.1 135 DPEPGRCRRTDGKKWRCSKEAVPDHKYCERHMHRGRQRSRKLVEA 179 79****************************************997 PP
2	QLQ	47	8e-17	66	100	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a++PvP++Ll++i+k XP_021286312.1 66 FTVFQLQELQLQSLIYKYMEAGLPVPHHLLLPIWK 100 8888******************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MEPQDSPLKI ARFADFGIGL TNLGDSWNME SNRLSGGEGS PPLGLGLELG CGSGHRPTGF 60 SKSCGFTVFQ LQELQLQSLI YKYMEAGLPV PHHLLLPIWK SFAGSVGGLH GNPYQLYSGF 120 LGCGPLQLEY KNGLDPEPGR CRRTDGKKWR CSKEAVPDHK YCERHMHRGR QRSRKLVEAS 180 QATTSSIRSS RTNADTNLSI SLQVDSSSSS GTHLSSSFIG FSPKSVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-35	GRF family protein