PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021286336.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 115aa    MW: 13101.2 Da    PI: 9.2116
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021286336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-13491188
                    EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88
                    f+k+lt  dv ++  +++p  ++ +     g     ++l+++de+g  W++ +  + +sg+    v+ +GW +F+++++L+ gD+v+F++++++
  XP_021286336.1  4 FKKALTDTDVKRR--FSFPDGCLPALppfRGC--HAIELQVKDETGILWNFAC--TIRSGMtpkLVIVSGWIQFARSKELQIGDVVLFYREDDR 91
                    6677755555554..68888888777776434..4579***************..666666678*************************77542 PP
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    
MAVFKKALTD TDVKRRFSFP DGCLPALPPF RGCHAIELQV KDETGILWNF ACTIRSGMTP  60
KLVIVSGWIQ FARSKELQIG DVVLFYREDD RVTGAHYKIE VKKGGRYSYW GTLQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35520.14e-08ARF family protein